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Carpentries Incubator Pre-Alpha This lesson is in the pre-alpha phase, which means that it is in early development, but has not yet been taught.

    Carpentries Incubator
    Imageomics Snakemake Workshop
    • Imageomics Snakemake Workshop
    • Key Points
    • Instructor Notes
    • Extract All Images

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    Imageomics Snakemake Workshop
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    Summary and Schedule
    1. Introduction
    2. Project Setup
    3. Environment Setup
    4. Create a Workflow
    5. Add an R Script
    6. Process multiple files
    7. Use a container
    8. Reuse another workflow
    9. Add Summary Analysis
    10. Run at Scale

    • Key Points
    • Instructor Notes
    • Extract All Images


    See all in one page

    Introduction


    Project Setup


    Environment Setup


    Create a Workflow


    Add an R Script


    Process multiple files


    Use a container


    Reuse another workflow


    Add Summary Analysis


    Run at Scale



    This lesson is subject to the Code of Conduct

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    Materials licensed under CC-BY 4.0 by the authors

    Template licensed under CC-BY 4.0 by The Carpentries

    Built with sandpaper (0.16.11), pegboard (0.7.7), and varnish (1.0.5)


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