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Output

When you run taxonopy resolve, TaxonoPy writes two outputs for each input file:

  • Resolved: <input_name>.resolved.<csv|parquet>
  • Unsolved: <input_name>.unsolved.<csv|parquet>

The output directory mirrors the input directory structure. Output format is controlled by the --output-format flag (csv or parquet).

What’s Inside

Each output row corresponds to one input record. Resolved entries contain the standardized taxonomy where available, while unsolved entries preserve the original input ranks. Both outputs include resolution metadata such as status and strategy information.

Example Files

  • examples/resolved/sample.resolved.parquet (generated with taxonopy resolve)
  • examples/resolved_with_common_names/sample.resolved.parquet (generated with taxonopy common-names)